EM Model Challenge - 2021
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Results
model coordinates only
fit to EM map
vs reference structure
vs other models
ligands
Comparative Analyses
help
Model Ranks (per target)
Models Pair-wise Comparison
Scores Pair-wise Comparison
Group Ranks (across targets)
Target:
β-Galactosidase: T0201 (emd_7770)
RNA polymerase: T0202 (emd_30210)
ORF3a ion channel: T0203 (emd_22898)
Filter by method:
ab-initio
optimized cryoEM model
optimized other known model
not optimized
ab-initio+optimized (mixed)
Filter by effort:
fully automated
partially automated, with some manual steps
manual
Score Weights:
·
ligands
Q-score (PTQ):
(MP)HOH clash:
·
model coordinates only
(MP)clash:
(MP)Ram.out:
(MP)Ram.fv:
(MP)Rot.out:
(MP)MP_score:
Cablam(Conf-out):
Cablam(Cα-out):
MOGUL composite:
MOGUL complete:
MM (strain energy):
NNP (strain energy):
PH4 (pharmacore):
·
fit to EM map
CCC:
SMOC:
box_CC:
CC_mask:
CC_vol:
CC_peaks:
EMRinger:
AtmIncl(All):
AtmIncl(BB):
Q-score:
LIVQ5 (Q-score for ligand + 5A vicinity):
LIVQ10 (Q-score for ligand + 10A vicinity):
·
vs reference structure (mono), vs other models
GDT_TS:
GDT_HA:
GDC_ALL:
GDC_SC:
LDDT:
CAD:
RMSD(Cα):
DAVIS_QA:
·
vs reference structure (multi)
QS(best):
QS(glob):
LDDT(o):
MMalign:
(HB)Prec.:
(HB)Jaccard:
(HB)Prec.(>6):
(HB)Jaccard(>6):
#
Model
Group
Name
Method
Combined Z-score
(normalized by
the sum of weights)
Rank
ab-initio/
optimized
auto/
man.
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